Skip to content

InvoiceinQuickBooks.Getpaidforless.

Merch Invoice takes card and bank payments on your QuickBooks Online invoices at rates quoted for your business. Add a fee for each payment method, put your brand on every invoice, and let QuickBooks record each payment on its own.

Now onboarding US businesses on QuickBooks Online, by invitation.

Where a $100 invoice goes

Sample invoice
  1. Invoice 1042Saved in QuickBooks$100.00
  2. Card fee you set, 4%Added as a line on the invoice$4.00
  3. Your customer paid by cardOn your branded pay page$104.00
  4. Deposited to your bankRecorded in QuickBooks$100.00
What getting paid cost you$0.00

The same invoice at a 3% rate with no card fee deposits $97.00. Card fees have to follow card-brand rules and the laws where you do business.

How it works

Keep invoicing the way you do now.

Merch Invoice runs alongside QuickBooks Online. You stay in QuickBooks; we take the payment and write the result back, so your books are finished when the money lands.

  • Connect QuickBooks Online once

    Sign in to Merch Invoice and click Connect to QuickBooks. Pick the accounts your deposits and fees should land in.

  • Save the invoice in QuickBooks

    Create invoices the way you always have and click Save. Merch Invoice picks each one up automatically.

  • Your customer gets a branded pay link

    They pay by card or bank transfer on a page with your logo, and see any fee before they pay.

  • QuickBooks updates itself

    The payment is applied to the invoice and the deposit is posted to match what reaches your bank.

Stays the same

  • Your customers, items and taxes
  • Invoice numbers and terms
  • Your accountant's reports

Goes away

  • Typing payments in by hand
  • Matching deposits to invoices
  • One flat rate on every card
Merch Invoice by Merchly · How it works02
Fees

Pay less to get paid.

Two levers, both yours to set:

  • Rates quoted for your business. Card and bank-transfer pricing based on your volume and average invoice, not a one-size rate.
  • A fee for each payment method. For example 4% on cards and $0 on bank transfers. It appears as its own line in QuickBooks.

Run your own numbers

Use a recent processing statement. Nothing you type here leaves your browser.

Total your customers pay by card in a typical month

Fees on your statement divided by card volume

Card fees you pay now
$14,400
a year, $1,200 a month
Paid by customers instead
$14,400
a year, from a 3.00% card fee

Customers who pay by bank transfer skip the card fee. Your Merch Invoice rates are quoted for your volume, so we'll show your exact figures side by side with your statement.

Get a side-by-side quote
Merch Invoice by Merchly · Fees03
Invoices

Invoices that look like your business.

Your customers see your name and logo from the email to the receipt, with the payment options and fees you chose. You set it up once in Merch Invoice; QuickBooks stays as it is.

pay.merchinvoice.com/i/4QX7-1042
HE

Harbor Electric Supply

Sample business

Invoice 1042 · Due Nov 14

$100.00

Payment method
Card4% card fee: $4.00
Bank transferNo fee
Total with card fee$104.00

Preview of a pay page. The button is for illustration.

  • Your logo and colors

    On the pay page, receipts and every email.

  • Card or bank transfer

    Choose which methods each customer can use.

  • A fee for each method

    A percent or a flat amount, shown before they pay.

  • Partial payments

    Let customers pay part now and the rest later.

  • Reminders on your schedule

    Before the due date, on it, and after. They stop when paid.

  • Late fees

    Flat or percent, after the number of days you pick.

  • Autopay and saved methods

    Customers store a card or bank account with consent.

  • A customer portal

    Open and paid invoices and receipts in one place.

Merch Invoice by Merchly · Invoices04
Your books

QuickBooks stays right without you touching it.

Every change on the payment side is written back to QuickBooks Online through Intuit's official API, once, even if a notice arrives twice.

How Merch Invoice works with QuickBooks
When this happensQuickBooks shows
A customer pays an invoiceA payment for the amount charged, applied to that invoice
You charge a card feeA fee line on the invoice, so invoice, charge and payment agree
A batch of payments settlesOne deposit that matches the amount your bank receives
You refund a paymentThe refund, with the invoice reopened or credited
You edit or void the invoiceThe pay link updates or closes, and reminders stop
You record a cash or check paymentThe pay link closes so the customer can't pay twice

Example with a 4% card fee: a $100.00 invoice gets a $4.00 fee line, the $104.00 payment is applied to it, and the deposit posts as $100.00, the same amount your bank shows.

Merch Invoice by Merchly · Your books05
Security

Built to hold your keys carefully.

You're trusting us with your books and your customers' payments. Here's how we handle both.

Read the security overview
  • Card and bank numbers never reach us

    Customers type them into hosted payment fields from our PCI DSS compliant processing partners. We keep a token.

  • QuickBooks access you control

    You approve access in QuickBooks and can disconnect at any time. We never see your Intuit password.

  • Two-step sign-in for everyone

    Every person on your account confirms sign-in with a second step.

  • Encrypted and separated

    Access tokens are encrypted, and every record is scoped to your business alone.

Merch Invoice by Merchly · Security06
Pricing

Priced for your business, in US dollars.

Send us a recent processing statement and we'll put your current fees next to a Merch Invoice quote, line by line, before you decide anything.

What you pay forHow it's chargedPrice
Merch Invoice subscriptionMonthly, in US dollarsQuoted with your invite
Card paymentsPer transactionQuoted for your volume
Bank transfers (ACH)Per transactionQuoted for your volume
Fees you charge customersCard, bank or late feesYours to keep or waive
Get a fee comparison

We reply within one business day.

Merch Invoice by Merchly · Pricing07
Partners

Your clients run on QuickBooks. Earn on every one you refer.

Bookkeepers, accountants, consultants and payments agents refer QuickBooks Online businesses to Merch Invoice and earn ongoing residual income through the Merchly Agent Partner Program. Our team handles the calls, setup and support.

Questions

Before you ask.

Do I have to change how I work in QuickBooks?

No. Keep creating invoices in QuickBooks Online and click Save. Merch Invoice emails your customer a link to pay, then records the payment back in QuickBooks for you.

How does Merch Invoice lower what I pay in fees?

Two ways. Your card and bank-transfer rates are quoted for your business instead of a one-size rate, and you can add a fee for each payment method so customers who pay by card cover the cost of card processing.

Am I allowed to charge customers a card fee?

Card-brand rules and some state laws limit card fees, and you're responsible for following them. We'll help you set up a fee that fits where you do business, and you can charge nothing at all.

Will my deposits match what's in QuickBooks?

Yes. Payments settle in batches, and Merch Invoice posts one QuickBooks deposit per batch for the amount your bank receives, so bank reconciliation is a single match.

Does it work with QuickBooks Desktop?

Not today. Merch Invoice works with QuickBooks Online for US businesses invoicing in US dollars.

How do I get started?

Request access and tell us how you take payments now. We reply within one business day with a fee comparison, then set up your account and send you an invite.

What happens if I disconnect QuickBooks?

Merch Invoice stops reading and writing your QuickBooks data right away. Your QuickBooks records stay as they are, and you can reconnect from your settings at any time.

Merch Invoice by Merchly · Questions08

Keep the whole invoice.

Tell us how you take payments today. We'll reply within one business day with a fee comparison and your invite.